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Converting CellML

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\nAuthor: Edward Vigmond edward.vigmond@u-bordeaux.fr\n\ <h2 id=\"converting-from-cellml\">Converting from CellML\n<h2 id=\"intro\"\

Intro\n

CellML is a markup language for describing, amongst other things,\ \ ionic models. Many models are published and availmable from the <a href=\"https://models.cellml.org/electrophysiology\"\ CellML Model Repository. However, this format can only be processed by a machine.\ \ CARPentry uses its own MarkUp Language called EasyML.

\n<h2 id=\"the-script\"\ The Script\n

Conversion of a CellML file is performed using the cellml_converter.py\ \ script:

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usage: cellml_converter.py [-h] [--Vm VM] [--Istim ISTIM]\
\ [--out OUT]\n                           [--trace-all] [--plugin] [--params]\n\
\                           [--keep-redundant]\n                           CMLfile\n\
\nConvert CellML 1.0 to model format\n\npositional arguments:\n  CMLfile       \
\    CellML file\n\noptional arguments:\n  -h, --help        show this help message\
\ and exit\n  --Vm VM           transmembrane voltage variable [V]\n  --Istim ISTIM\
\     stimulus current variable [i_Stim]\n  --out OUT         output file\n  --trace-all\
\       trace all variables\n  --plugin          is a plug-in, not a whole cell\
\ model\n  --params          parameterize all constants\n  --keep-redundant  keep\
\ redundant differential expressions, eg alpha, beta\n                    and diff)

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The flags mean the following

05_EasyML