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Fibre Angle Stimulation I - Rotation
\n\nAuthor: Laura Marx laura.marx@medunigraz.at\n\ <h2 id=\"introduction\">Introduction\n
The aim of this tutorial is to study\ \ the effect of fiber orientation on the electrical behavior of cardiac tissue.\ \ Generally, electrical properties of the myocardial tissue can be described by\ \ the bidomain model accounting for the intracellular and extracellular domain.\ \ The domains are of anisotropic nature, the intracellular domain even more so than\ \ the extracellular domain resulting in ''unequal anisotropy ratios'' affecting\ \ the heart's electrical behavior causing two effects ''rotation'' and ''distribution''.\ \ This tutorial focuses on the ''rotation'' effect, which occurs when two spaces\ \ have different degrees of anisotropy. If considering an isotropic tissue the electrical\ \ field <span class=\"math inline\">\(\mathbf{E}\) and current density\ \ <span class=\"math inline\">\(\mathbf{J}\) would point in the same direction.\ \ It follows that <span class=\"math inline\">\(\mathbf{J}=g\mathbf{E}\)\ \ with g being the scalar conductivity. In anisotropic tissue this is not the case\ \ as the conductiviy tensor rotates <span class=\"math inline\">\(\mathbf{J}\\ ) towards the fiber direction relative to <span class=\"math inline\">\\ (\mathbf{E}\). As anisotropy ratios are unequal in the intra- and extracellular\ \ space current densities <span class=\"math inline\">\(\mathbf{J}_i\)\ \ and <span class=\"math inline\">\(\mathbf{J}_e\) are rotated by different\ \ amounts.<a href=\"#fn1\" class=\"footnote-ref\" id=\"fnref1\" role=\"doc-noteref\"\
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\n<h2 id=\"experimental-setup\">Experimental Setup\nAnalytical\ \ vs. Numerical Setup: Given is a 2D strip of infinite length of width\ \ W=10mm in which fibers are oriented with <span class=\"math inline\">\(\alpha\ \ = 45^{\circ}\) (shown as grey dotted lines in the figure below). Conductivities\ \ are given as <span class=\"math inline\">\(g{iL} = 0.2\) S/m, <span\ \ class=\"math inline\">\(g{iT} = 0.02\) S/m, <span class=\"math inline\"\ \(g{eL} = 0.2\) S/m and <span class=\"math inline\">\(g{eT} = 0.08\\ ) S/m where L and T indicate directions along and transverse to the fiber\ \ orientation, respectively (Anisotropy ratios are unequal!). The tissues membrane\ \ surface-to-volume ratio and the resistance are given as <span class=\"math inline\"\ \(\beta = 0.14\mu m^{-1}\) and <span class=\"math inline\">\(R_{m}\ \ = 0.91 \Omega m^{2}\) . For numerical analysis we assume that the length\ \ L of the strip is not infinite, but <span class=\"math inline\">\(L\gg\lambda\\ ). For the data given choosing L=60mm should suffice. The spatial resolution\ \ should be used as height of the strip (only one layer of 3D elements). The analytical\ \ solutions should be used to verify the numerical results in 3D.
\n\nModel Settings: A hexahedral FE model\ \ with dimensions of 60mm x 10mm x 1mm shall be generated functioning as cardiac\ \ tissue strip. An orthotropic fiber setup is used with a sheet angle of <span class=\"\ math inline\">\(90^{\circ}\).
\nElectrical Settings:\ \ As passive ionic model the modified Beeler-Router Druhard-Roberge model as implemented\ \ in LIMPET is used with <span class=\"math inline\">\(R{m}\) set to <span\ \ class=\"math inline\">\(0.91 \Omega m^{2}\) and <span class=\"math inline\"\ \(\beta = 0.14\mu m^{-1}\). Current <span class=\"math inline\">\(\\ mathbf{J}\) is injected by Electrode A at x=-L/2 and withdrawn by electrode\ \ B at x=+L/2. Electrode C is located at x=0 and can be gounded or not.
\nConductivity\ \ Settings: Unequal anisotropy is assigned using the following values:
\n\ <div class=\"sourceCode\" id=\"cb1\"><pre class=\"sourceCode bash\"><code class=\"\ sourceCode bash\"><span id=\"cb1-1\"><a href=\"#cb1-1\" aria-hidden=\"true\"><span\ \ class=\"ex\">gregion[0].g_il = 0.2\n<span id=\"cb1-2\"\ <a href=\"#cb1-2\" aria-hidden=\"true\"><span class=\"ex\">gregion[0].g_it\ \ = 0.02\n<span id=\"cb1-3\"><a href=\"#cb1-3\" aria-hidden=\"true\"\ <span class=\"ex\">gregion[0].g_in = 0.02\n<span id=\"\ cb1-4\"><a href=\"#cb1-4\" aria-hidden=\"true\"><span class=\"ex\">gregion[0].g_el\ \ = 0.2\n<span id=\"cb1-5\"><a href=\"#cb1-5\" aria-hidden=\"true\"\ <span class=\"ex\">gregion[0].g_et = 0.08\n<span id=\"\ cb1-6\"><a href=\"#cb1-6\" aria-hidden=\"true\"><span class=\"ex\">gregion[0].g_en\ \ = 0.08\nSolution Method:\ \ The simulation is solved using the parabolic formulation of the bidomain equations\ \ with the Crank-Nicolson method.
\n<h2 id=\"input-parameters-and-usage\">Input\ \ Parameters and Usage\nGo to the following directory to run underlying\ \ experiment:
\n<div class=\"sourceCode\" id=\"cb2\"><pre class=\"sourceCode\ \ bash\"><code class=\"sourceCode bash\"><span id=\"cb2-1\"><a href=\"#cb2-1\" aria-hidden=\"\ true\"><span class=\"bu\">cd <span class=\"va\">${TUTORIAL}/02_EP_tissue/14_bidm_rotation/\n\The following experiment specific options are available (default values are indicated):